Evolutionary Learning of Syntax Patterns for Genic Interaction Extraction

Created by W.Langdon from gp-bibliography.bib Revision:1.8120

@InProceedings{Bartoli:2015:GECCO,

• author = "Alberto Bartoli and Andrea {De Lorenzo} and Eric Medvet and Fabiano Tarlao and Marco Virgolin",
• title = "Evolutionary Learning of Syntax Patterns for Genic Interaction Extraction",
• booktitle = "GECCO '15: Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation",
• year = "2015",
• editor = "Sara Silva and Anna I Esparcia-Alcazar and Manuel Lopez-Ibanez and Sanaz Mostaghim and Jon Timmis and Christine Zarges and Luis Correia and Terence Soule and Mario Giacobini and Ryan Urbanowicz and Youhei Akimoto and Tobias Glasmachers and Francisco {Fernandez de Vega} and Amy Hoover and Pedro Larranaga and Marta Soto and Carlos Cotta and Francisco B. Pereira and Julia Handl and Jan Koutnik and Antonio Gaspar-Cunha and Heike Trautmann and Jean-Baptiste Mouret and Sebastian Risi and Ernesto Costa and Oliver Schuetze and Krzysztof Krawiec and Alberto Moraglio and Julian F. Miller and Pawel Widera and Stefano Cagnoni and JJ Merelo and Emma Hart and Leonardo Trujillo and Marouane Kessentini and Gabriela Ochoa and Francisco Chicano and Carola Doerr",
• isbn13 = "978-1-4503-3472-3",
• pages = "1183--1190",
• keywords = "genetic algorithms, genetic programming, Real World Applications",
• month = "11-15 " # jul,
• organisation = "SIGEVO",
• address = "Madrid, Spain",
• URL = "http://doi.acm.org/10.1145/2739480.2754706",
• DOI = "doi:10.1145/2739480.2754706",
• publisher = "ACM",
• publisher_address = "New York, NY, USA",
• abstract = "There is an increasing interest in the development of techniques for automatic relation extraction from unstructured text. The biomedical domain, in particular, is a sector that may greatly benefit from those techniques due to the huge and ever increasing amount of scientific publications describing observed phenomena of potential clinical interest. In this paper, we consider the problem of automatically identifying sentences that contain interactions between genes and proteins, based solely on a dictionary of genes and proteins and a small set of sample sentences in natural language. We propose an evolutionary technique for learning a classifier that is capable of detecting the desired sentences within scientific publications with high accuracy. The key feature of our proposal, that is internally based on Genetic Programming, is the construction of a model of the relevant syntax patterns in terms of standard part-of-speech annotations. The model consists of a set of regular expressions that are learned automatically despite the large alphabet size involved. We assess our approach on two realistic datasets and obtain 74percent accuracy, a value sufficiently high to be of practical interest and that is in line with significant baseline methods.",
• notes = "Also known as \cite{2754706} GECCO-2015 A joint meeting of the twenty fourth international conference on genetic algorithms (ICGA-2015) and the twentith annual genetic programming conference (GP-2015)",

}

Genetic Programming entries for Alberto Bartoli Andrea De Lorenzo Eric Medvet Fabiano Tarlao Marco Virgolin

Citations